@ARTICLE{bsg-hydrolases-2006,
AUTHOR = {Kaihsu Tai and Marc Baaden and
Stuart Murdock and Bing Wu and {Muan Hong} Ng and Steven Johnston and Richard Boardman and
Hans Fangohr and Katherine Cox and Jonathan W. Essex and Mark S. P. Sansom},
TITLE = {Three hydrolases and a transferase: comparative
analysis of active-site dynamics via the {BioSimGrid} database},
JOURNAL = {Journal of Molecular Graphics and Modelling },
YEAR = {2006},
PDF = {bsg-hydrolases-2006.pdf}
}
@ARTICLE{bsg-Structure-2006,
AUTHOR = {{Muan Hong} Ng and Steven Johnston and Bing Wu and Stuart Murdock and Kaihsu Tai and Hans Fangohr and Simon J. Cox and Jonathan W. Essex and Mark S. P. Sansom and Paul Jeffreys},
TITLE = {{BioSimGrid}: {G}rid-enabled biomolecular simulation data storage and analysis},
JOURNAL = {Future Generation Computer Systems },
YEAR = {2006},
OPTKEY = {},
VOLUME = {22},
OPTNUMBER = {},
PAGES = {657--664},
OPTMONTH = {},
OPTANNOTE = {},
PDF = {bsg-Structure-2006.pdf}
}
@ARTICLE{bsg-dbase-2005,
AUTHOR = {Bing Wu and Kaihsu Tai and {Muan Hong} Ng and Steven Johnston and Stuart Murdock and Hans Fangohr and Mark S. P. Sansom and Jonathan Essex and Paul Jeffreys and Simon Cox },
TITLE = {Towards a {G}rid-enabled biomolecular simulation database},
JOURNAL = { In Proceedings of UK e-Science All Hands Meeting 2005},
YEAR = {2005},
OPTKEY = {},
OPTVOLUME = {},
OPTNUMBER = {},
PAGES = {577Ð-580},
OPTMONTH = {},
OPTNOTE = {},
OPTANNOTE = {},
PDF = {bsg-dbase-2005.pdf}
}
@ARTICLE{bsg-chem-2005,
AUTHOR = {Christopher J. Woods and {Muan Hong} Ng and Steven Johnston and Stuart E. Murdock and Bing Wu and Kaihsu Tai and Hans Fangohr and Paul Jeffreys and Simon Cox and Jeremy G. Frey and Mark S. P. Sansom and Jonathan W. Essex},
TITLE = {{G}rid computing and biomolecular simulation},
JOURNAL = {Philosophical Transactions: Mathematical, Physical and Engineering Sciences},
YEAR = {2005},
OPTKEY = {},
VOLUME = {363},
NUMBER = {1833},
OPTPAGES = {},
MONTH = {August},
OPTANNOTE = {},
PDF = {bsg-chem-2005.pdf}
}
@ARTICLE{bsg-sjjInterface-2005,
AUTHOR = {Steven Johnston},
TITLE = {Storage Resource Broker ({SRB}), Large scientific data and {P}ython},
JOURNAL = {Europython 2005},
YEAR = {2005},
OPTKEY = {},
OPTVOLUME = {},
OPTNUMBER = {},
OPTPAGES = {},
OPTMONTH = {},
OPTNOTE = {},
OPTANNOTE = {}
}
@ARTICLE{bsg-repository-2004,
AUTHOR = {Kaihsu Tai and Stuart Murdock and Bing Wu and {Muan Hong} Ng and Steven Johnston and Hans Fangohr and Simon J. Cox and Paul Jeffreys and Jonathan W. Essex and Mark S. P. Sansom},
TITLE = {{BioSimGrid}: {T}owards a worldwide repository for biomolecular simulations},
JOURNAL = { Organic \& Biomolecular Chemistry },
YEAR = {2004},
OPTKEY = {},
VOLUME = {2},
OPTNUMBER = {},
PAGES = {3219--3221},
OPTMONTH = {},
OPTNOTE = {},
OPTANNOTE = {},
PDF = {bsg-repository-2004.pdf}
}
@ARTICLE{bsg-storage-2004,
AUTHOR = {{Muan Hong} Ng and Steven Johnston and Stuart Murdock and Bing Wu and Kaihsu Tai and Hans Fangohr and Simon Cox and Jonathan W. Essex and Mark Sansom and Paul Jeffreys},
TITLE = {Efficient data storage and analysis for generic biomolecular simulation data},
JOURNAL = {In Proceedings of UK e-Science All Hands Meeting 2004},
YEAR = {2004},
EDITOR = {Simon Cox},
OPTVOLUME = {},
OPTNUMBER = {},
PAGES = {443--450},
OPTMONTH = {},
OPTANNOTE = {},
PDF = {bsg-storage-2004.pdf}
}
@ARTICLE{bsg-security-2004,
AUTHOR = {Bing Wu and Matthew Dovey and Kaihsu Tai and {Muan Hong} Ng and Stuart and Murdock and Hans Fangohr and Steven Johnston and Paul Jeffreys and Simon Cox and Jonathan W. Essex and Mark S.P. Sansom},
TITLE = {Security and {BioSimGrid}: {A} Biomolecular Simulation Database},
JOURNAL = {Proceedings of Workshop on {G}rid Security Practice and Experience},
YEAR = {2004},
OPTKEY = {},
OPTVOLUME = {},
OPTNUMBER = {},
OPTPAGES = {},
MONTH = {July},
NOTE = {Published as: University of York, Department of Computer Science Technical Report YCS-2004-380},
OPTANNOTE = {},
PDF = {bsg-security-2004.pdf}
}
@ARTICLE{bsg-portal-2004,
AUTHOR = {Bing Wu and Matthew Dovey and {Muan Hong} Ng and Kaihsu Tai and Stuart Murdock and Hans Fangohr and Steven Johnston and Paul Jeffreys and Simon Cox and Jonathan Essex and Mark S. P. Sansom},
TITLE = {A Web / {G}rid Portal Implementation of {BioSimGrid}: {A} Biomolecular Simulation Database},
JOURNAL = {Journal of Digital Information Management},
YEAR = {2004},
OPTKEY = {},
VOLUME = {2},
NUMBER = {2},
PAGES = {74-78},
OPTMONTH = {},
OPTANNOTE = {},
PDF = {bsg-portal-2004.pdf}
}
@ARTICLE{bsg-intro-2003,
AUTHOR = {Bing Wu and Kaihsu Tai and Stuart Murdock and {Muan Hong} Ng and Steven Johnston and Hans Fangohr and Paul Jeffreys and Simon Cox and Jonathan Essex and Mark S.P. Sansom},
TITLE = {{BioSimGrid}: {A} Distributed Database for Biomolecular Simulations},
JOURNAL = {Proceedings of UK e-Science All Hands Meeting 2003},
YEAR = {2003},
OPTKEY = {},
OPTVOLUME = {},
OPTNUMBER = {},
PAGES = {412--419},
OPTMONTH = {},
OPTANNOTE = {},
PDF = {bsg-intro-2003.pdf}
}
@ARTICLE{bsg-basis-2003,
AUTHOR = {Yalini Arinaminpathy and Oliver Beckstein and Philip Biggin and Peter Bond and Carmen Domene and Andrew Pang and Mark Sansom},
TITLE = {Large Scale Biomolecular Simulations: {C}urrent Status And Future Prospects},
JOURNAL = { Proceedings of UK e-Science All Hands Meeting},
YEAR = {2003},
OPTKEY = {},
OPTVOLUME = {},
OPTNUMBER = {},
OPTPAGES = {},
OPTMONTH = {},
OPTANNOTE = {},
PDF = {bsg-basis-2003.pdf}
}
@ARTICLE{bsg-kitemarkpaper-2006,
AUTHOR = {Stuart E. Murdock and
Kaihsu Tai and
{Muan Hong} Ng and
Steven Johnston and
Bing Wu and
Hans Fangohr and
Charles A. Laughton and
Jonathan W. Essex and Mark S. P. Sansom
},
TITLE = {Quality Assurance for Biomolecular Simulations},
JOURNAL = {Journal of Chemical Theory and Computation},
YEAR = {2006},
OPTKEY = {},
OPTVOLUME = {},
OPTNUMBER = {},
OPTPAGES = {},
NOTE = {Sumbitted},
OPTANNOTE = {},
PDF = {bsg-kitemarkpaper-2006.pdf}
}
@ARTICLE{bsg-standalone-2006,
AUTHOR = {Richard P. Boardman and Steven Johnston
and Jonathan W. Essex
and {Muan Hong} Ng and Hans Fangohr and
Kaihsu Tai and Mark S. P. Sansom
},
TITLE = {{BioSimGrid} on the desktop},
JOURNAL = {},
YEAR = {2006},
OPTKEY = {},
OPTVOLUME = {},
OPTNUMBER = {},
OPTPAGES = {},
MONTH = {August},
NOTE = {In preparation for submission},
OPTANNOTE = {}
}
@ARTICLE{bsg-summary-2006,
AUTHOR = { Steven Johnston and Richard P. Boardman
and {Muan Hong} Ng
and Jonathan W. Essex
and Hans Fangohr and
Kaihsu Tai and Mark S. P. Sansom
},
TITLE = {{BioSimGrid}: {I}nfrastructure, Performance and Applications},
JOURNAL = {},
YEAR = {2006},
OPTKEY = {},
OPTVOLUME = {},
OPTNUMBER = {},
OPTPAGES = {},
MONTH = {August},
NOTE = {In preparation for submission},
OPTANNOTE = {}
}
@ARTICLE{bsg-FOM-2006,
AUTHOR = { Steven Johnston and
Richard Boardman and
Hans Fangohr and
Simon Cox
},
TITLE = {Managing large volumes of distributed scientific data.},
JOURNAL = {Journal of Grid Computing},
YEAR = {2006},
OPTKEY = {},
OPTVOLUME = {},
OPTNUMBER = {},
OPTPAGES = {},
MONTH = {November},
NOTE = {(Submitted)},
OPTANNOTE = {},
PDF = {bsg-FOM-2006.pdf}
}
@ARTICLE{sjj-jasmin-paper,
AUTHOR = {Jiao, Z. and Wason, J. and Molinari, M. and Johnston, S. and Cox, S.J.},
TITLE = {Integrating data management into engineering applications},
JOURNAL = {Proceedings of UK e-Science All Hands Meeting, Nottingham, UK},
YEAR = {2003},
OPTKEY = {},
OPTVOLUME = {},
OPTNUMBER = {},
PAGES = {687 -- 694},
MONTH = {September},
OPTNOTE = {},
OPTANNOTE = {},
PDF = {sjj-jasmin-paper.pdf}
}
@MISC{ffvsdb2,
AUTHOR = {Stuart Murdock and {Muan Hong Ng} and Steven Johnston and Hans Fangohr and Jon Essex},
TITLE = {Comparing the performance of a database, specific binary files and net{CDF} for data retrieval},
NOTE = {[Online; accessed 10-December-2005], \url{http://www.biosimgrid.org}{BioSimGrid Website} },
YEAR = {2004}
}
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